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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25578905_25588725_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25578905 - 25588725
Intron Length:
9821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCATTTTAACT
Flanking Amino Acid:
ITVELYPTDRRATGFGFLNA
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
73.3
0.81
1.2
83.78
37.4

Associated Gene:

Gene:
SV2C
Ensembl Gene ID:
ENSAPLG00000004492
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004610
25578721 - 25685760
107040