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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25589891_25591511_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25589891 - 25591511
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACAT
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
GTTAGCTGAAAT
Flanking Amino Acid:
TFVNTTFYNTDLEQYKFVDS
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
66.2
39.1
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
84.1
0.77
0.7
79.5
26.1
Minor 5ss
39.8
-1.1
3.1
56.6
47.5
Minor BPS
49.3
0.03
2
72.28
43.7

Associated Gene:

Gene:
SV2C
Ensembl Gene ID:
ENSAPLG00000004492
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004610
25578721 - 25685760
107040