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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25595029_25595781_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25595029 - 25595781
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
CTGTTTTTCACA
Flanking Amino Acid:
LTAVWFTLSFGYYGLSVWFP
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
83.7
0.76
0.8
79.2
32.9
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
55.7
0.17
1.8
65.7
41.8

Associated Gene:

Gene:
SV2C
Ensembl Gene ID:
ENSAPLG00000004492
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004610
25578721 - 25685760
107040