Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25663627_25685732_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

25663627 - 25685732

Intron Length:

22106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGAAGG

5'SS Class:

major

3'SS Sequence:

TCATATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

TGTCTCATATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.3

66.4

45.1

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

83.1

0.75

0.8

80.7

36.3

Minor 5ss

34.3

-1.8

2.9

39.9

Minor BPS

1.8

70.9

Associated Gene:

Gene:

SV2C

Ensembl Gene ID:

ENSAPLG00000004492

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004610

25578721 - 25685760

107040