About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25848192_25854593_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25848192 - 25854593
Intron Length:
6402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGATCCTTATTC
Flanking Amino Acid:
TDDAIYCKTPDLTSVKEPSE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
39
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80.6
0.69
0.8
78.2
35.2
Minor 5ss
34.7
-1.7
3.2
49.7
46.1
Minor BPS
66.7
0.5
1.6
72.18
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004910
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044184
25844026 - 25865723
21698
ENSAPLT00000005074
25844026 - 25865723
21698