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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25872346_25873941_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25872346 - 25873941
Intron Length:
1596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATGAC
5'SS Class:
major
3'SS Sequence:
TCTCTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATGTCCTGATTC
Flanking Amino Acid:
AGCDLKTTDKNGKTALAMAS
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.1
36.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
82.6
0.73
0.8
76.5
32.1
Minor 5ss
30.9
-2.2
3.5
42.4
45.1
Minor BPS
55.4
0.15
1.7
65.63
40.2

Associated Gene:

Gene:
ANKDD1B
Ensembl Gene ID:
ENSAPLG00000004990
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040923
25867357 - 25889323
21967
ENSAPLT00000017320
25865375 - 25893305
27931
ENSAPLT00000005154
25867357 - 25893305
25949