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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25877701_25878761_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25877701 - 25878761
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCCCTCCACA
Flanking Amino Acid:
NNVDLAPKPEQKNSPLHLAV
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
59.9
0.31
2
77.44
39.2

Associated Gene:

Gene:
ANKDD1B
Ensembl Gene ID:
ENSAPLG00000004990
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040923
25867357 - 25889323
21967
ENSAPLT00000017320
25865375 - 25893305
27931
ENSAPLT00000005154
25867357 - 25893305
25949