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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25887015_25889044_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25887015 - 25889044
Intron Length:
2030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTGCTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CATTGCTTATTT
Flanking Amino Acid:
KSVNINAVDTLKRTALHFAV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.7
0.76
0.8
81.7
34.6
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
53.7
0.19
2
72.6
44.8

Associated Gene:

Gene:
ANKDD1B
Ensembl Gene ID:
ENSAPLG00000004990
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040923
25867357 - 25889323
21967
ENSAPLT00000017320
25865375 - 25893305
27931
ENSAPLT00000005154
25867357 - 25893305
25949