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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25898597_25898719_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25898597 - 25898719
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTCTCTCTATA
Flanking Amino Acid:
QCTNPLQGTKRSGLTTSQSV
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
85.3
0.8
0.6
81
24.4
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
50.5
0.01
1.8
68.58
37.5

Associated Gene:

Gene:
POLK
Ensembl Gene ID:
ENSAPLG00000005033
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005232
25898512 - 25930886
32375