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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25904982_25906280_R

Intron Information:

Intron Rank:
10
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
25904982 - 25906280
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TTTCTCTTTAAAG|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTCTTTAAAG
Flanking Amino Acid:
SLGLGSTHLEKDGERKSRST
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.2
37
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81
0.7
1
82.3
26.9
Minor 5ss
76.5
0.89
2
81.9
31.2
Minor BPS
71.5
0.54
1.4
72.3
40.7

Associated Gene:

Gene:
POLK
Ensembl Gene ID:
ENSAPLG00000005033
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005232
25898512 - 25930886
32375