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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25906745_25908561_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25906745 - 25908561
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCAAA
5'SS Class:
major
3'SS Sequence:
CTTTGTGTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAA
Flanking Amino Acid:
EQKTQLTASAGIAPNTMLAK
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.5
0.48
1.1
74.9
39
Minor 5ss
44.9
-0.6
2.6
57.3
47
Minor BPS
71.8
0.68
1.3
77.35
32.8

Associated Gene:

Gene:
POLK
Ensembl Gene ID:
ENSAPLG00000005033
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005232
25898512 - 25930886
32375