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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25912091_25912450_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25912091 - 25912450
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TAACACTGAACT
Flanking Amino Acid:
PIAVGSMSMLSTSNYHARRF
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65
40.6
Major BPS
75
0.62
1
65.3
41.5
Major PPT
74.5
0.55
1
79.4
26.6
Minor 5ss
31.2
-2.2
3.2
36.8
41.4
Minor BPS
57.8
0.32
1.7
74.55
40.8

Associated Gene:

Gene:
POLK
Ensembl Gene ID:
ENSAPLG00000005033
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005232
25898512 - 25930886
32375