Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25912604_25918702_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25912604 - 25918702

Intron Length:

6099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTAATC

5'SS Class:

major

3'SS Sequence:

TTATTTTGTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AGTTTTTTAATT

Flanking Amino Acid:

QQQLLKAQLQVDRLVMELEQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

37.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.79

0.9

84.8

35.6

Minor 5ss

-1.5

3.2

52.5

44.2

Minor BPS

74.5

0.85

1.1

82.38

32.8

Associated Gene:

Gene:

POLK

Ensembl Gene ID:

ENSAPLG00000005033

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005232

25898512 - 25930886

32375