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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25920781_25922313_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25920781 - 25922313
Intron Length:
1533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATGATTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.5
37.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
37.4
-1.4
3
52.9
43.6
Minor BPS
57.8
0.32
1.7
75.42
40.9

Associated Gene:

Gene:
POLK
Ensembl Gene ID:
ENSAPLG00000005033
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005232
25898512 - 25930886
32375