About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25931857_25935168_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25931857 - 25935168
Intron Length:
3312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
PVELCGVLSKWTNYIHGWQD
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.82
0.8
80.6
36.1
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
CERT1
Ensembl Gene ID:
ENSAPLG00000005669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005900
25931761 - 26007017
75257