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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25995718_26000405_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25995718 - 26000405
Intron Length:
4688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTTAAAG
Flanking Amino Acid:
AVGTHRFVQKVEEMVQNHIT
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.5
0.78
0.9
86.4
25.2
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
78.4
0.75
1.3
80.63
34.8

Associated Gene:

Gene:
CERT1
Ensembl Gene ID:
ENSAPLG00000005669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044416
25934803 - 26007017
72215