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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26024541_26024683_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26024541 - 26024683
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TGTAATATAACT
Flanking Amino Acid:
HLVKSHMTHNRSKINLQDLQ
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
69.1
0.48
1
70
32.1
Major PPT
81.1
0.7
0.9
81.4
34.9
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
53.4
0.19
1.8
75.89
40

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943