Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26024839_26025044_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26024839 - 26025044

Intron Length:

206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAAAGC

5'SS Class:

major

3'SS Sequence:

TTTTTCCCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TAATACATCATT

Flanking Amino Acid:

NLLPQQACLQMLGVQGASQD

Intron Amino Acid Position:

814

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

64.9

39.3

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

89.7

0.89

0.6

82.1

29.9

Minor 5ss

39.3

-1.2

2.9

52.3

44.5

Minor BPS

46.3

-0.2

2.1

68.31

42.1

Associated Gene:

Gene:

HMGCR

Ensembl Gene ID:

ENSAPLG00000006209

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006524

26022786 - 26039728

16943