About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26025445_26026045_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26025445 - 26026045
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TCGCTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TACTCCTGATTA
Flanking Amino Acid:
AVIPAKVVKEVLKTTTEDIV
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.1
34.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
73.3
0.52
0.9
72.8
37.5
Minor 5ss
37.6
-1.4
3.6
51.8
39.7
Minor BPS
55.2
0.16
1.7
65.38
41.2

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943