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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26028500_26028634_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26028500 - 26028634
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTTGATTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CCTGCTTTGATT
Flanking Amino Acid:
STNRGCRAICLGGGASSRIL
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.2
0.66
0.8
73.8
35.8
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
59.8
0.39
1.4
69.68
42.6

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943