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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26029585_26030117_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26029585 - 26030117
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
TTTACATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTATACTTACTT
Flanking Amino Acid:
ECVRILGNAKKGAKFLTDAE
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.9
0.74
0.9
74
40.5
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
56.5
0.28
1.8
73.52
43.5

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943