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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26032598_26033057_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26032598 - 26033057
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATTT
Flanking Amino Acid:
FPACVSLVLELSRESREGRP
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
72.5
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
33.2
-1.9
3.1
43.3
43.8
Minor BPS
57.4
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943