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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26035461_26035586_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26035461 - 26035586
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
HFLDKELTGLNEALPFFLLL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943