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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26035675_26036237_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26035675 - 26036237
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTCTAT
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAATACATAAAT
Flanking Amino Acid:
LRQLGSKYILGIAGLFTIFS
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
67.9
39.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
78.1
0.63
1
82.5
26.6
Minor 5ss
44.5
-0.6
3.2
64.7
46.6
Minor BPS
49.4
0.03
1.9
68.8
40.6

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943