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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26036350_26037160_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26036350 - 26037160
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TAAACGCTAACT
Flanking Amino Acid:
WNYECPKLEEDVLSSDIIIL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
85.3
31.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
75.7
0.58
1
70.3
40.4
Minor 5ss
39.9
-1.1
3.4
58
40.7
Minor BPS
48.1
-0
2.4
72.12
43.8

Associated Gene:

Gene:
HMGCR
Ensembl Gene ID:
ENSAPLG00000006209
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006524
26022786 - 26039728
16943