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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26082381_26091184_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26082381 - 26091184
Intron Length:
8804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTCCTTAATT
Flanking Amino Acid:
LKRQNEKSCVEFSHKATLLE
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.7
85.1
29.3
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
82.8
1.11
1.1
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006971
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007229
26065424 - 26106390
40967