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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26201195_26208960_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26201195 - 26208960
Intron Length:
7766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCATTTACCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTCAGTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
80
0.75
1
78.6
31
Major PPT
60.7
0.24
1.1
59.7
39.9
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
53.9
0.12
2.2
72.1
40.4

Associated Gene:

Gene:
FAM169A
Ensembl Gene ID:
ENSAPLG00000006999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007259
26201154 - 26237765
36612