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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26211778_26213130_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26211778 - 26213130
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CCCTTCTAAAAT
Flanking Amino Acid:
SVPSREGLQQVKSVGERVVL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78
0.63
0.8
77.2
31.6
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
49.7
0.06
1.8
63.72
46.8

Associated Gene:

Gene:
FAM169A
Ensembl Gene ID:
ENSAPLG00000006999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007259
26201154 - 26237765
36612