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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26217360_26222679_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26217360 - 26222679
Intron Length:
5320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
GCTTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTGCTTTTATTT
Flanking Amino Acid:
QMTELEPQLTIDSQKGRESL
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
64.9
40.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
79.8
0.67
0.8
78
35.1
Minor 5ss
37.5
-1.4
3
52.7
44
Minor BPS
56.1
0.27
1.5
72.24
39.7

Associated Gene:

Gene:
FAM169A
Ensembl Gene ID:
ENSAPLG00000006999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007259
26201154 - 26237765
36612