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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26222735_26223067_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26222735 - 26223067
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
SLNVLANTSEDPGVALISIR
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79
0.65
1
83.6
31.8
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
FAM169A
Ensembl Gene ID:
ENSAPLG00000006999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007259
26201154 - 26237765
36612