About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26223207_26225139_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26223207 - 26225139
Intron Length:
1933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
ACACCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TATATGTTAACA
Flanking Amino Acid:
EESAHYVSHRRLEVRANLFE
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
65.7
0.35
1
58.1
37.6
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
58.6
0.27
2.1
72.94
38.7

Associated Gene:

Gene:
FAM169A
Ensembl Gene ID:
ENSAPLG00000006999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007259
26201154 - 26237765
36612