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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26227613_26237000_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26227613 - 26237000
Intron Length:
9388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCCATT
5'SS Class:
major
3'SS Sequence:
TATCTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TATCTCTTTATA
Flanking Amino Acid:
DSSSEEAEIELCEFPQCQDV
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
72.9
44.2
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
82
0.72
0.8
76.8
31.5
Minor 5ss
49.8
-0
2.9
75.2
40.7
Minor BPS
59.3
0.29
1.6
69.46
37

Associated Gene:

Gene:
FAM169A
Ensembl Gene ID:
ENSAPLG00000006999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007259
26201154 - 26237765
36612