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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26238738_26239274_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26238738 - 26239274
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
TTTCCTTCCATT
Flanking Amino Acid:
ALKLSTLCSEHACFRKTKIK
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
75.1
41.1
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
79.7
0.67
0.8
77.5
29.9
Minor 5ss
43.2
-0.8
3.3
64.9
46.4
Minor BPS
52
0.14
2
77.39
39.6

Associated Gene:

Gene:
GFM2
Ensembl Gene ID:
ENSAPLG00000007221
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007543
26238502 - 26259269
20768