About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26239360_26239818_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
26239360 - 26239818

Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATCAGTT

5'SS Class:
major

3'SS Sequence:
TGTTTGTTTCCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
GACAAAT

U12 Branch Point Sequence:
TCAACCTGACAA

Flanking Amino Acid:
TGQRSYSCSPEDVKSLRSVI

Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.8
0.51
1.2
71.6
38.5

Major BPS
51.7
0.04
1.2
59.2
35.9

Major PPT
85.2
0.79
0.9
76.9
42.1

Minor 5ss
48
-0.2
3.3
73.4
43.4

Minor BPS
46.1
-0.3
1.8
55.41
42.8

Associated Gene:

Gene:
GFM2

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

26238502 - 26259269
20768