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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26239865_26240925_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26239865 - 26240925
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTACGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTGTTTTACGC
Flanking Amino Acid:
LRSVINPHISRIRNIGIMAH
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
80.3
0.68
0.9
77.3
36
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
48.8
-0.1
2
64.58
42.1

Associated Gene:

Gene:
GFM2
Ensembl Gene ID:
ENSAPLG00000007221
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007543
26238502 - 26259269
20768