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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26249340_26252267_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26249340 - 26252267
Intron Length:
2928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTATGTTAACA
Flanking Amino Acid:
ENFDVIPADKLQSAIRRVTL
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
89.1
0.88
0.7
84.5
29.6
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
57.8
0.24
2.1
72.48
39.3

Associated Gene:

Gene:
GFM2
Ensembl Gene ID:
ENSAPLG00000007221
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007543
26238502 - 26259269
20768