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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26252417_26252962_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26252417 - 26252962
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTACAA
U12 Branch Point Sequence:
ACAAGTATACTT
Flanking Amino Acid:
PAPNERSYEFLQWYKDDLCA
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
49.4
-0
1.1
58.6
36.6
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
37.6
-0.8
2
48.15
39

Associated Gene:

Gene:
GFM2
Ensembl Gene ID:
ENSAPLG00000007221
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007543
26238502 - 26259269
20768