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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26253104_26253182_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26253104 - 26253182
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
ATTTCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTCAAGAATT
Flanking Amino Acid:
SSVYNINKSCTERISRLLLP
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
74
38.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80
0.68
0.8
74.8
34.4
Minor 5ss
31
-2.2
2.6
32.6
35
Minor BPS
51
0.11
2
76.95
38.8

Associated Gene:

Gene:
GFM2
Ensembl Gene ID:
ENSAPLG00000007221
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007543
26238502 - 26259269
20768