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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26258167_26258435_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26258167 - 26258435
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
GCCTTCTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
ATCAGCATAATT
Flanking Amino Acid:
SACVSRCLQKALKKAGIQVL
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
59.3
41.3
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
70.5
0.46
0.9
65.7
35
Minor 5ss
28.3
-2.5
3.5
38
46.9
Minor BPS
48
-0
2
67.91
43.1

Associated Gene:

Gene:
GFM2
Ensembl Gene ID:
ENSAPLG00000007221
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007543
26238502 - 26259269
20768