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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26260443_26263128_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26260443 - 26263128
Intron Length:
2686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
RLSNHRCRMLRRGIAAEPLF
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
84.1
0.77
0.9
81
35.4
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
HEXB
Ensembl Gene ID:
ENSAPLG00000007852
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008208
26260382 - 26276809
16428