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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26264488_26265074_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26264488 - 26265074
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCATGTAAAT
Flanking Amino Acid:
WQEVFDNKAQLKPDTVVEVW
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
48.3
-0
2.2
75.72
40.6

Associated Gene:

Gene:
HEXB
Ensembl Gene ID:
ENSAPLG00000007852
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027292
26260425 - 26276809
16385
ENSAPLT00000008208
26260382 - 26276809
16428