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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26305331_26309902_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26305331 - 26309902
Intron Length:
4572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCGG
5'SS Class:
major
3'SS Sequence:
TGTTTGTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTCTCATTAATT
Flanking Amino Acid:
RGRRGAAAAAVWKKMSVSMH
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
56.9
47.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.4
0.62
0.9
73.1
37.2
Minor 5ss
36.5
-1.5
3
51.3
45
Minor BPS
69.9
0.7
1.6
81.98
39.5

Associated Gene:

Gene:
ENC1
Ensembl Gene ID:
ENSAPLG00000001033
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001020
26303978 - 26316981
13004