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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26311716_26315710_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
26311716 - 26315710
Intron Length:
3995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCATGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTGTCCCCATGC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
68.7
0.42
0.9
65
36.3
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
43.1
-0.5
2.3
59.24
45.6

Associated Gene:

Gene:
ENC1
Ensembl Gene ID:
ENSAPLG00000001033
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001020
26303978 - 26316981
13004