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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26393774_26394850_R

Intron Information:

Intron Rank:
143592
Intron Class:
major
Intron Phase:
Intron Coordinates:
26393774 - 26394850
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
53.7
0.2
1.7
69.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024589
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027545
26393526 - 26395341
1816