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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26471774_26472461_F

Intron Information:

Intron Rank:
143231
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
26471774 - 26472461
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTGG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTTCAGAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.7
47.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
47.7
-0.2
2.9
65.1
46.1
Minor BPS
47.7
-0.3
1.9
58.24
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027166
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044082
26469020 - 26473146
4127