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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26644285_26660318_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26644285 - 26660318
Intron Length:
16034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTAGC
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTCTGTGTTACA
Flanking Amino Acid:
CKNNKDAFNNDLNASQTQGP
Intron Amino Acid Position:
1621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
70.8
39.4
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
81.6
0.71
0.9
75.5
38.4
Minor 5ss
36.3
-1.6
2.7
43.1
38.8
Minor BPS
43.6
-0.5
2.5
62.32
44.3

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019003
26644124 - 26703195
59072
ENSAPLT00000008616
26644124 - 26739888
95765
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765