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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26660620_26663353_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26660620 - 26663353
Intron Length:
2734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
SLLSATGSYEIMGHNQSDRF
Intron Amino Acid Position:
1521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765
ENSAPLT00000019003
26644124 - 26703195
59072
ENSAPLT00000008616
26644124 - 26739888
95765