About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26665693_26665781_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26665693 - 26665781
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AAGCTTTGAAAA
Flanking Amino Acid:
MSFPGSTGTEIVQTVQNLTR
Intron Amino Acid Position:
1345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
46.4
-0.2
1.4
50.38
33.7

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008616
26644124 - 26739888
95765
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765
ENSAPLT00000019003
26644124 - 26703195
59072