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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26665821_26669485_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26665821 - 26669485
Intron Length:
3665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGTAA
5'SS Class:
major
3'SS Sequence:
GTGTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTTAAAG
Flanking Amino Acid:
EMSDDNVEYKEGSMSFPGST
Intron Amino Acid Position:
1332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
62.8
40.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
0.9
74.7
40
Minor 5ss
40.2
-1.1
3.5
54.8
49.4
Minor BPS
60.7
0.2
1.5
60.98
41.1

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765
ENSAPLT00000019003
26644124 - 26703195
59072
ENSAPLT00000008616
26644124 - 26739888
95765