About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26675720_26676355_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26675720 - 26676355
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGAAA
5'SS Class:
major
3'SS Sequence:
TTCATCTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTGCTTTATCC
Flanking Amino Acid:
WMRHIQDAVERCPEEKKGRK
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
68.2
38.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71
0.47
1
71.1
33.6
Minor 5ss
29.5
-2.3
3.4
38.5
46.8
Minor BPS
66.6
0.5
1.7
77.75
38.7

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040038
26644124 - 26739888
95765
ENSAPLT00000019003
26644124 - 26703195
59072
ENSAPLT00000008616
26644124 - 26739888
95765
ENSAPLT00000040940
26644124 - 26717491
73368